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--- pub:start [2019/01/28 14:42] – [ILDIS publications] admin@ildis.org
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-====== ILDIS publications ======
+====== ILDIS annotated bibliography ======
 (under construction)
-Bisby, F.A., White, R.J., Macfarlane, T.D. & Babac, M.T.
-The Vicieae Database Project: experimental uses of a monographic taxonomic database for species of vetch and pea.
-In: J. Felsenstein, ed. //Numerical Taxonomy//, Berlin, Springer-Verlag, NATO Advanced Study Institute Series, **G1**, 1983, 625-629
 Adey, M.E., Allkin, R., Bisby, F.A., White, R.J. & Macfarlane,  T.D.
 The Vicieae Database: an experimental taxonomic monograph.
-In: R. Allkin and F.A. Bisby, eds.
+In: R. Allkin and F.A. Bisby, 1984, pp. 175-188
+<WRAP lo rightalign>
+//(Describes the Vicieae Database Project and how its morphological data set
+for the legume tribe Vicieae was assembled and managed
+(using the Exir DBMS with several purpose-written import and export utilities)
+in order to permit querying and the production of various printed reports.
+Data encoding and conversion is discussed.)//
+</WRAP>
+R. Allkin and F.A. Bisby, eds.
 //Databases in Systematics//,
-London, Academic Press, Systematics Association Special Volume **26**, 1984, 175-188
+London, Academic Press, Systematics Association Special Volume **26**, 1984.
-[book at 8SG]
 Allkin, R. & White, R.J.
@@ Line 19: / Line 24: @@
 //Classification and related methods of data analysis//,
 Elsevier (North-Holland), Amsterdam, 1988, 653- 402
-[book at 8SG]
+<WRAP lo rightalign>
+:!: //(Notes to be completed)//
+</WRAP>
 Allkin, R., White, R.J. & Winfield, P.J.
 Handling the structure of biological data.
 //Mathematical and Computer Modelling//, **16**, 1992, 1-9
+Babac M.T. & Bisby, F.A.
+A Chemotaxonomic Database.
+In: R. Allkin and F.A. Bisby, 1984, pp. 209-218
+<WRAP lo rightalign>
+//(Describes the phytochemical database for the legume tribe Vicieae,
+managed by the Exir DBMS, built as part of the Vicieae Database Project
+and planned to be a "phase 2" project for ILDIS.)//
+</WRAP>
+Bisby, F.A., White, R.J., Macfarlane, T.D. & Babac, M.T.
+The Vicieae Database Project: experimental uses of a monographic taxonomic database for species of vetch and pea.
+In: J. Felsenstein, ed. //Numerical Taxonomy//, Berlin, Springer-Verlag, NATO Advanced Study Institute Series, **G1**, 1983, 625-629
+Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds.,
+//Designs for a Global Plant Species Information System//,
+Oxford University Press, 1993
+[the title page quotes the Clarendon Press, Oxford, 1993, but the actual publication date was February 1994]
+Burnett J., IOPI: genesis of GPSIS? In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds., //Designs for a Global Plant Species Information System//, Oxford University Press, 1994, 334-342 (IOPI could be viewed as a step between ILDIS and CoL.)
+Roskov Y.R., Bisby F.A., Zarucchi J.L., Schrire B.D. & White R.J. (eds.)  //ILDIS World Database of Legumes:  draft checklist, version 10//[published June 2006, but CD shows November 2005 date].  ILDIS, Reading, UK, 2006 [CD-Rom:  ISBN 0 7049 1248 1] (also available here at https://ildis.org/LegumeWeb10.01.shtml)
+Roskov, Y.R., Bisby, F.A., Zarucchi, J.L., Schrire, B.D. & White, R.J.
+World database of Legumes - results from the first twenty years of the ILDIS project.
+In: //Information Systems on Biodiversity of Species & Ecosystems:
+Scientific Program & Abstracts//, St. Petersburg, 2003, 6-7
+Roskov Y.R., Bisby F.A., Zarucchi J.L., Schrire B.D. & White R.J. (eds.)
+//ILDIS World Database of Legumes:  draft checklist, version 10//
+[published June 2006, but CD shows November 2005 date].
+ILDIS, Reading, UK, 2006
+[CD-Rom:  ISBN 0 7049 1248 1]
+(also available online at https://ildis.org)
+Shimura, J., Ichiyanagi, Y., Hollis, S., White, R.J. & Bisby, F.A.
+A linked rhizobia and plant host information system (RAPHIS) on the World-wide Web.
+//Microbiol. Cult. Coll.//, **14**, 1997, 23-32
+Southon, I.W., Bisby, F.A., Buckingham, J., Harborne, J.B., Zarucchi, J.L., Polhill, R.M., Adams, B.R., Lock, J.M., White, R.J., Bowes, I., Hollis, S. & Heald, J.
+//Phytochemical Dictionary of the Leguminosae//.
+Chapman & Hall, London, 1994, 1580pp  [ISBN 0 412 39770 6]
+<WRAP lo rightalign>
+:!: //(Notes to be completed)//
+</WRAP>
 White, R.J., Allkin, R. & Winfield, P.J.
 Systematic databases: the Baobab design and the Alice system.
 In: Fortuner, R., ed.,
-//Advances in Computer Methods for Systematic Biology: Artificial Intelligence, Databases, Computer Vision//,
+//Advances in Computer Methods for Systematic Biology:
+Artificial Intelligence, Databases, Computer Vision//,
 Johns Hopkins University Press, Baltimore, 1993, 297-311
-[book at 8SG]
-Southon, I.W., Bisby, F.A., Buckingham, J., Harborne, J.B., Zarucchi, J.L., Polhill, R.M., Adams, B.R., Lock, J.M., White, R.J., Bowes, I., Hollis, S. & Heald, J.
+<WRAP lo rightalign>
-//Phytochemical Dictionary of the Leguminosae//.
+//(Describes four aspects of taxonomic data
-Chapman & Hall, London, 1994, 1580pp  [ISBN 0 412 39770 6]
+(the taxon hierarchy, character variability and dependence, and missing values)
-[book at 8SG]
+and how these are addressed in the unimplemented "Baobab" taxonomic database design
+and in the Alice software suite which was specifically implemented
+to handle these issues and provide a complete DBMS
+for taxonomists and other biologists working with taxonomically organised data sets.)//
+</WRAP>
 White, R.J. & Allkin, R.
 A strategy for the evolution of database designs.
-In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds.,
+In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., 1993, pp. 284-303
-//Designs for a Global Plant Species Information System//,
-Oxford University Press, 1994, 284-303
-[book at 8SG]
-Shimura, J., Ichiyanagi, Y., Hollis, S., White, R.J. & Bisby, F.A.
+<WRAP lo rightalign>
-A linked rhizobia and plant host information system (RAPHIS) on the World-wide Web.
+//(Emphasised the importance of data exchange mechanisms (such as Delta and XDF),
-//Microbiol. Cult. Coll.//, **14**, 1997, 23-32
+including the use of XDF by the Alice software to merge contributed data sets,
+rather than relying on a single common data structure for all databases.)//
-Roskov, Y.R., Bisby, F.A., Zarucchi, J.L., Schrire, B.D. & White, R.J.
+</WRAP>
-World database of Legumes - results from the first twenty years of the ILDIS project.
-In: //Information Systems on Biodiversity of Species & Ecosystems: Scientific Program & Abstracts//, St. Petersburg, 2003, 6-7
 White, R.J., Jones, A.C., Gray, W.A. & Bisby, F.A.
@@ Line 57: / Line 111: @@
 Heriot-Watt University, Edinburgh, 2004, 92-105
 [ISBN 1-904410-12-X]
-[book at 8SG]
-Roskov Y.R., Bisby F.A., Zarucchi J.L., Schrire B.D. & White R.J. (eds.)
+<WRAP lo rightalign>
-//ILDIS World Database of Legumes:  draft checklist, version 10//
+:!: //(Notes to be completed)//
-[published June 2006, but CD shows November 2005 date].
+</WRAP>
-ILDIS, Reading, UK, 2006
-[CD-Rom:  ISBN 0 7049 1248 1]
-(also available online at https://ildis.org)
 White, R.J.
 Linking biodiversity databases:  preparing species diversity information sources by assembling, merging and linking databases.
 In: Curry, G.B. & Humphries, C.J., eds.,
-//Biodiversity Databases: Techniques, Politics and Applications//, CRC Press, 2007, 111-128, ISBN 0-415-33290-7
+//Biodiversity Databases: Techniques, Politics and Applications//,
-[book at 8SG]
+CRC Press, Systematics Association Special Volume **73**, 2007, 111-128, ISBN 0-415-33290-7
-===== Notes (primarily for the Anne Bruneau legume history MS) =====
+<WRAP lo rightalign>
+//(Explains how large collaborative biological databases
+(such as the ERMS checklist and the ILDIS World Database of Legumes)
+were assembled by //**merging**// contributed data sets,
+and contrasts this with //**linking**// databases together into larger systems
+in initiatives such as the Species 2000 Dynamic Checklist
+and its further development in the Spice project.
+Databases such as ILDIS and the Species 2000 Catalogue of Life are seen as
+taxonomic backbones to which a variety of further data sets can be linked
+to expand the range of data available to the user.
+The reliability of such "onward links" in the presence of factors
+such as differing taxonomic treatments in the various data sets is discussed,
+with a proposed solution using "cross-maps" prepared using the Litchi software,
+which was developed further in the "Biodiversity World" and "Species 2000 Europa" projects.)//
+</WRAP>
-==== History ====
+Zarucchi, J.L., Winfield, P.J., Polhill, R.M., Hollis, S., Bisby, F.A. & Allkin, R.
+The ILDIS project on the world's legume species diversity.
+In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., 1993, pp. 131-144
-According to Peter Brewer's PhD project first year report (November 2001),
+<WRAP lo rightalign>
-ILDIS (Bisby //et al//. 2000, 2001)
+//(Describes the assembly of the ILDIS database from regional contributions
-began in 1985 (Zarucchi //et al//., 1993)
+to make the "Phase 1" checklist with geographical data
-and was (at version 5 in 2001) "nearing completion".
+and a few morphological and plant-use fields, with full citation of references,
+and explains current and planned future activities aiming to use this as a "backbone"
+to link in "Phase 2" data sets, especially phytochemistry (Babac & Bisby, 1984) and nodulation data.
+Emphasises the role of ILDIS in providing services to users,
+and interestingly assumes that scientists will send their requests to "enquiry centres",
+thus failing to foresee the rapid growth of the Internet and especially the World-Wide Web,
+although an experimental online data retrieval was planned.)//
+</WRAP>
-==== Descendants ====
-ILDIS was was of the first two or three(?) GSDs contributing to the Species 2000 Catalogue of Life.
-Burnett J., IOPI: genesis of GPSIS?
-In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds.,
-//Designs for a Global Plant Species Information System//,
-Oxford University Press, 1994, 334-342
-(IOPI could be viewed as a step between ILDIS and CoL.)
-[book at 8SG]