ILDIS

International Legume Database & Information Service

User Tools

Site Tools


pub:start

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision
Previous revision
pub:start [2019/01/29 15:11] admin@ildis.orgpub:start [2026/08/20 14:19] (current) – created admin@ildis.org
Line 1: Line 1:
-====== ILDIS publications ======+====== ILDIS annotated bibliography ====== 
 + 
 +(under construction) 
 + 
 +Adey, M.E., Allkin, R., Bisby, F.A., White, R.J. & Macfarlane,  T.D.  
 +The Vicieae Database: an experimental taxonomic monograph.   
 +In: R. Allkin and F.A. Bisby, 1984, pp. 175-188 
 + 
 +<WRAP lo rightalign> 
 +//(Describes the Vicieae Database Project and how its morphological data set  
 +for the legume tribe Vicieae was assembled and managed  
 +(using the Exir DBMS with several purpose-written import and export utilities)  
 +in order to permit querying and the production of various printed reports.   
 +Data encoding and conversion is discussed.)// 
 +</WRAP> 
 + 
 +R. Allkin and F.A. Bisby, eds.  
 +//Databases in Systematics//,  
 +London, Academic Press, Systematics Association Special Volume **26**, 1984.  
 + 
 +Allkin, R. & White, R.J.   
 +Data management models for biological classification.   
 +In: Bock, H.H., ed.,  
 +//Classification and related methods of data analysis//,  
 +Elsevier (North-Holland), Amsterdam, 1988, 653- 402  
 + 
 +<WRAP lo rightalign> 
 +:!: //(Notes to be completed)// 
 +</WRAP> 
 + 
 +Allkin, R., White, R.J. & Winfield, P.J.   
 +Handling the structure of biological data.   
 +//Mathematical and Computer Modelling//, **16**, 1992, 1-9 
 + 
 +Babac M.T. & Bisby, F.A. 
 +A Chemotaxonomic Database.  
 +In: R. Allkin and F.A. Bisby, 1984, pp. 209-218 
 + 
 +<WRAP lo rightalign> 
 +//(Describes the phytochemical database for the legume tribe Vicieae,  
 +managed by the Exir DBMS, built as part of the Vicieae Database Project  
 +and planned to be a "phase 2" project for ILDIS.)// 
 +</WRAP> 
 + 
 +Bisby, F.A., White, R.J., Macfarlane, T.D. & Babac, M.T.  
 +The Vicieae Database Project: experimental uses of a monographic taxonomic database for species of vetch and pea.   
 +In: J. Felsenstein, ed. //Numerical Taxonomy//, Berlin, Springer-Verlag, NATO Advanced Study Institute Series, **G1**, 1983, 625-629 
 + 
 +Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds.,  
 +//Designs for a Global Plant Species Information System//,  
 +Oxford University Press, 1993  
 +[the title page quotes the Clarendon Press, Oxford, 1993, but the actual publication date was February 1994]  
 + 
 +Burnett J., IOPI: genesis of GPSIS? In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds., //Designs for a Global Plant Species Information System//, Oxford University Press, 1994, 334-342 (IOPI could be viewed as a step between ILDIS and CoL.) 
 + 
 +Roskov Y.R., Bisby F.A., Zarucchi J.L., Schrire B.D. & White R.J. (eds.)  //ILDIS World Database of Legumes:  draft checklist, version 10//[published June 2006, but CD shows November 2005 date].  ILDIS, Reading, UK, 2006 [CD-Rom:  ISBN 0 7049 1248 1] (also available here at https://ildis.org/LegumeWeb10.01.shtml) 
 + 
 +Roskov, Y.R., Bisby, F.A., Zarucchi, J.L., Schrire, B.D. & White, R.J.   
 +World database of Legumes - results from the first twenty years of the ILDIS project.   
 +In: //Information Systems on Biodiversity of Species & Ecosystems:  
 +Scientific Program & Abstracts//, St. Petersburg, 2003, 6-7 
 + 
 +Roskov Y.R., Bisby F.A., Zarucchi J.L., Schrire B.D. & White R.J. (eds.)   
 +//ILDIS World Database of Legumes:  draft checklist, version 10//  
 +[published June 2006, but CD shows November 2005 date].   
 +ILDIS, Reading, UK, 2006  
 +[CD-Rom:  ISBN 0 7049 1248 1] 
 +(also available online at https://ildis.org) 
 + 
 +Shimura, J., Ichiyanagi, Y., Hollis, S., White, R.J. & Bisby, F.A.   
 +A linked rhizobia and plant host information system (RAPHIS) on the World-wide Web.   
 +//Microbiol. Cult. Coll.//, **14**, 1997, 23-32 
 + 
 +Southon, I.W., Bisby, F.A., Buckingham, J., Harborne, J.B., Zarucchi, J.L., Polhill, R.M., Adams, B.R., Lock, J.M., White, R.J., Bowes, I., Hollis, S. & Heald, J.   
 +//Phytochemical Dictionary of the Leguminosae//  
 +Chapman & Hall, London, 1994, 1580pp  [ISBN 0 412 39770 6] 
 + 
 +<WRAP lo rightalign> 
 +:!: //(Notes to be completed)// 
 +</WRAP> 
 + 
 +White, R.J., Allkin, R. & Winfield, P.J.   
 +Systematic databases: the Baobab design and the Alice system.   
 +In: Fortuner, R., ed.,  
 +//Advances in Computer Methods for Systematic Biology:  
 +Artificial Intelligence, Databases, Computer Vision//,  
 +Johns Hopkins University Press, Baltimore, 1993, 297-311 
 + 
 +<WRAP lo rightalign> 
 +//(Describes four aspects of taxonomic data  
 +(the taxon hierarchy, character variability and dependence, and missing values)  
 +and how these are addressed in the unimplemented "Baobab" taxonomic database design  
 +and in the Alice software suite which was specifically implemented  
 +to handle these issues and provide a complete DBMS  
 +for taxonomists and other biologists working with taxonomically organised data sets.)// 
 +</WRAP> 
 + 
 +White, R.J. & Allkin, R.  
 +A strategy for the evolution of database designs.   
 +In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., 1993, pp. 284-303 
 + 
 +<WRAP lo rightalign> 
 +//(Emphasised the importance of data exchange mechanisms (such as Delta and XDF),  
 +including the use of XDF by the Alice software to merge contributed data sets,  
 +rather than relying on a single common data structure for all databases.)// 
 +</WRAP> 
 + 
 +White, R.J., Jones, A.C., Gray, W.A. & Bisby, F.A.   
 +Creating frameworks to support interoperability of biodiversity data.   
 +//Proc. BNCOD21 Bioinformatics Workshop//,  
 +Heriot-Watt University, Edinburgh, 2004, 92-105   
 +[ISBN 1-904410-12-X] 
 + 
 +<WRAP lo rightalign> 
 +:!: //(Notes to be completed)// 
 +</WRAP> 
 + 
 +White, R.J.   
 +Linking biodiversity databases:  preparing species diversity information sources by assembling, merging and linking databases.   
 +In: Curry, G.B. & Humphries, C.J., eds.,  
 +//Biodiversity Databases: Techniques, Politics and Applications//,  
 +CRC Press, Systematics Association Special Volume **73**, 2007, 111-128, ISBN 0-415-33290-7   
 + 
 +<WRAP lo rightalign> 
 +//(Explains how large collaborative biological databases  
 +(such as the ERMS checklist and the ILDIS World Database of Legumes)  
 +were assembled by //**merging**// contributed data sets,  
 +and contrasts this with //**linking**// databases together into larger systems  
 +in initiatives such as the Species 2000 Dynamic Checklist  
 +and its further development in the Spice project.   
 +Databases such as ILDIS and the Species 2000 Catalogue of Life are seen as  
 +taxonomic backbones to which a variety of further data sets can be linked  
 +to expand the range of data available to the user.   
 +The reliability of such "onward links" in the presence of factors  
 +such as differing taxonomic treatments in the various data sets is discussed,  
 +with a proposed solution using "cross-maps" prepared using the Litchi software, 
 +which was developed further in the "Biodiversity World" and "Species 2000 Europa" projects.)// 
 +</WRAP> 
 + 
 +Zarucchi, J.L., Winfield, P.J., Polhill, R.M., Hollis, S., Bisby, F.A. & Allkin, R. 
 +The ILDIS project on the world's legume species diversity.  
 +In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., 1993, pp. 131-144  
 + 
 +<WRAP lo rightalign> 
 +//(Describes the assembly of the ILDIS database from regional contributions  
 +to make the "Phase 1" checklist with geographical data  
 +and a few morphological and plant-use fields, with full citation of references,  
 +and explains current and planned future activities aiming to use this as a "backbone"  
 +to link in "Phase 2" data sets, especially phytochemistry (Babac & Bisby, 1984) and nodulation data.   
 +Emphasises the role of ILDIS in providing services to users,  
 +and interestingly assumes that scientists will send their requests to "enquiry centres",  
 +thus failing to foresee the rapid growth of the Internet and especially the World-Wide Web,  
 +although an experimental online data retrieval was planned.)// 
 +</WRAP>
  
-  * [[.bib:]] 
-  * [[.notes:]] 
  
pub/start.1548774672.txt.gz · Last modified: by admin@ildis.org